Syncopy
0.1b1
GitHub
Documentation
Getting started with Syncopy
Installing Syncopy
Setting Up Your Python Environment
Importing Syncopy
Starting Up Parallel Workers
Syncopy User Guide
Syncopy for FieldTrip Users
Handling Data in Syncopy
Data Analysis and Processing
API for Users
Syncopy Developer Guide
Syncopy Data Classes
Reading and Writing Data
Tools for Developing Syncopy
Design Guide: Syncopy Compute Classes
API for Developers
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
P
|
S
|
T
|
U
|
V
|
W
_
__init__() (syncopy.AnalogData method)
(syncopy.datatype.base_data.BaseData method)
,
[1]
(syncopy.datatype.base_data.FauxTrial method)
,
[1]
(syncopy.datatype.base_data.Selector method)
,
[1]
(syncopy.datatype.base_data.StructDict method)
,
[1]
(syncopy.datatype.continuous_data.ContinuousData method)
,
[1]
(syncopy.datatype.discrete_data.DiscreteData method)
,
[1]
(syncopy.EventData method)
(syncopy.shared.computational_routine.ComputationalRoutine method)
,
[1]
(syncopy.shared.errors.SPYError method)
(syncopy.shared.errors.SPYIOError method)
(syncopy.shared.errors.SPYTypeError method)
(syncopy.shared.errors.SPYValueError method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
,
[1]
(syncopy.specest.mtmfft.MultiTaperFFT method)
,
[1]
(syncopy.specest.wavelet.WaveletTransform method)
,
[1]
(syncopy.SpectralData method)
(syncopy.SpikeData method)
(syncopy.StructDict method)
_abc_impl (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_append_docstring() (in module syncopy.shared.kwarg_decorators)
_append_signature() (in module syncopy.shared.kwarg_decorators)
_checksum_algorithm (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_classname_to_extension() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_compute_pltArr() (in module syncopy.plotting._plot_spectral)
_defaultDimord() (syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
_gen_filename() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_get_optimal_wavelet_scales() (in module syncopy.specest.wavelet)
_get_time() (syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_get_trial() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_hdfFileAttributeProperties (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_hdfFileDatasetProperties (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_infoFileProperties (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_is_empty() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_layout_subplot_panels() (in module syncopy.plotting.spy_plotting)
_make_consistent() (syncopy.datatype.base_data.Selector method)
_make_trialdef() (in module syncopy.specest.mtmconvol)
_mode (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_prep_analog_plots() (in module syncopy.plotting._plot_analog)
_prep_plots() (in module syncopy.plotting.spy_plotting)
_prep_spectral_plots() (in module syncopy.plotting._plot_spectral)
_prep_toilim_avg() (in module syncopy.plotting.spy_plotting)
_preview_trial() (syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_selection() (syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
_selection_setter() (syncopy.datatype.base_data.Selector method)
_set_cfg() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property_with_dataset() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property_with_memmap() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property_with_ndarray() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property_with_none() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_set_dataset_property_with_str() (syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
_setup_colorbar() (in module syncopy.plotting.spy_plotting)
_setup_figure() (in module syncopy.plotting.spy_plotting)
_shapes() (syncopy.datatype.continuous_data.ContinuousData property)
_spwCaller (syncopy.datatype.base_data.BaseData attribute)
(syncopy.datatype.continuous_data.ContinuousData attribute)
(syncopy.datatype.discrete_data.DiscreteData attribute)
_t0() (syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
A
actual (syncopy.shared.errors.SPYValueError attribute)
AnalogData (class in syncopy)
args (syncopy.shared.errors.SPYError attribute)
(syncopy.shared.errors.SPYIOError attribute)
(syncopy.shared.errors.SPYTypeError attribute)
(syncopy.shared.errors.SPYValueError attribute)
array_parser() (in module syncopy.shared.parsers)
availableMethods (in module syncopy.specest.freqanalysis)
availableOutputs (in module syncopy.specest.freqanalysis)
availableTapers (in module syncopy.specest.freqanalysis)
availableWavelets (in module syncopy.specest.freqanalysis)
B
BaseData (class in syncopy.datatype.base_data)
best_match() (in module syncopy.shared.tools)
C
cfg (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
cfg() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
channel (syncopy.AnalogData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
channel() (syncopy.AnalogData property)
(syncopy.datatype.base_data.Selector property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
cleanup() (in module syncopy)
clear() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.base_data.StructDict method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
(syncopy.EventData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
(syncopy.SpikeData method)
,
[1]
(syncopy.StructDict method)
,
[1]
cluster_cleanup() (in module syncopy)
ComputationalRoutine (class in syncopy.shared.computational_routine)
compute() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
compute_parallel() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
compute_sequential() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
computeFunction() (syncopy.shared.computational_routine.ComputationalRoutine static method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol static method)
(syncopy.specest.mtmfft.MultiTaperFFT static method)
(syncopy.specest.wavelet.WaveletTransform static method)
container (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
container() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
ContinuousData (class in syncopy.datatype.continuous_data)
copy() (syncopy.AnalogData method)
,
[1]
(syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.base_data.StructDict method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
(syncopy.EventData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
(syncopy.SpikeData method)
,
[1]
(syncopy.StructDict method)
,
[1]
D
data (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
data() (syncopy.AnalogData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
data_parser() (in module syncopy.shared.parsers)
definetrial() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
(syncopy.EventData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
(syncopy.SpikeData method)
,
[1]
detect_parallel_client() (in module syncopy.shared.kwarg_decorators)
dimord (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
dimord() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
DiscreteData (class in syncopy.datatype.discrete_data)
E
environment variable
SPYTMPDIR
esi_cluster_setup() (in module syncopy)
EventData (class in syncopy)
eventid (syncopy.EventData attribute)
eventid() (syncopy.datatype.base_data.Selector property)
(syncopy.EventData property)
exists (syncopy.shared.errors.SPYIOError attribute)
expected (syncopy.shared.errors.SPYTypeError attribute)
F
FauxTrial (class in syncopy.datatype.base_data)
filename (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
filename() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
filename_parser() (in module syncopy.shared.parsers)
freq (syncopy.SpectralData attribute)
freq() (syncopy.datatype.base_data.Selector property)
(syncopy.SpectralData property)
freqanalysis() (in module syncopy)
fromkeys() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
fs_loc (syncopy.shared.errors.SPYIOError attribute)
G
generate_artificial_data() (in module syncopy.tests.misc)
get() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
get_defaults() (in module syncopy)
H
hdr (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpikeData attribute)
hdr() (syncopy.AnalogData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpikeData property)
I
initialize() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
io_parser() (in module syncopy.shared.parsers)
items() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
K
keys() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
L
legal (syncopy.shared.errors.SPYValueError attribute)
load() (in module syncopy)
log (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
log() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
M
mode (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
mode() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
module
syncopy
mtmconvol() (in module syncopy.specest.mtmconvol)
mtmfft() (in module syncopy.specest.mtmfft)
multipanelplot() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
MultiTaperFFT (class in syncopy.specest.mtmfft)
MultiTaperFFTConvol (class in syncopy.specest.mtmconvol)
P
padding() (in module syncopy)
pop() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
popitem() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
preallocate_output() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
process_metadata() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
S
sample (syncopy.EventData attribute)
(syncopy.SpikeData attribute)
sample() (syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpikeData property)
sampleinfo (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
sampleinfo() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
samplerate (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
samplerate() (syncopy.AnalogData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
save() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
(syncopy.EventData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
(syncopy.SpikeData method)
,
[1]
scalar_parser() (in module syncopy.shared.parsers)
selectdata() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.datatype.base_data.BaseData method)
(syncopy.datatype.continuous_data.ContinuousData method)
(syncopy.datatype.discrete_data.DiscreteData method)
(syncopy.EventData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
(syncopy.SpikeData method)
,
[1]
Selector (class in syncopy.datatype.base_data)
setdefault() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
singlepanelplot() (in module syncopy)
(syncopy.AnalogData method)
,
[1]
(syncopy.SpectralData method)
,
[1]
SpectralData (class in syncopy)
SpikeData (class in syncopy)
SPYError
SPYIOError
SPYTMPDIR
SPYTypeError
SPYValueError
SPYWarning() (in module syncopy.shared.errors)
squeeze() (syncopy.datatype.base_data.FauxTrial method)
StructDict (class in syncopy)
(class in syncopy.datatype.base_data)
syncopy
module
T
T() (syncopy.datatype.base_data.FauxTrial property)
tag (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
tag() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
taper (syncopy.SpectralData attribute)
taper() (syncopy.datatype.base_data.Selector property)
(syncopy.SpectralData property)
time (syncopy.AnalogData attribute)
(syncopy.SpectralData attribute)
time() (syncopy.AnalogData property)
(syncopy.datatype.base_data.Selector property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.SpectralData property)
timepoints() (syncopy.datatype.base_data.Selector property)
trialdefinition (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
trialdefinition() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.base_data.Selector property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
trialid (syncopy.EventData attribute)
(syncopy.SpikeData attribute)
trialid() (syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpikeData property)
trialinfo (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
trialinfo() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
trials (syncopy.AnalogData attribute)
(syncopy.EventData attribute)
(syncopy.SpectralData attribute)
(syncopy.SpikeData attribute)
trials() (syncopy.AnalogData property)
(syncopy.datatype.base_data.BaseData property)
(syncopy.datatype.base_data.Selector property)
(syncopy.datatype.continuous_data.ContinuousData property)
(syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpectralData property)
(syncopy.SpikeData property)
trialtime (syncopy.EventData attribute)
(syncopy.SpikeData attribute)
trialtime() (syncopy.datatype.discrete_data.DiscreteData property)
(syncopy.EventData property)
(syncopy.SpikeData property)
U
unit (syncopy.SpikeData attribute)
unit() (syncopy.datatype.base_data.Selector property)
(syncopy.SpikeData property)
unwrap_cfg() (in module syncopy.shared.kwarg_decorators)
unwrap_io() (in module syncopy.shared.kwarg_decorators)
unwrap_select() (in module syncopy.shared.kwarg_decorators)
update() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
V
values() (syncopy.datatype.base_data.StructDict method)
(syncopy.StructDict method)
,
[1]
var (syncopy.shared.errors.SPYTypeError attribute)
varname (syncopy.shared.errors.SPYTypeError attribute)
(syncopy.shared.errors.SPYValueError attribute)
W
wavelet() (in module syncopy.specest.wavelet)
WaveletTransform (class in syncopy.specest.wavelet)
with_traceback() (syncopy.shared.errors.SPYError method)
(syncopy.shared.errors.SPYIOError method)
(syncopy.shared.errors.SPYTypeError method)
(syncopy.shared.errors.SPYValueError method)
write_log() (syncopy.shared.computational_routine.ComputationalRoutine method)
(syncopy.specest.mtmconvol.MultiTaperFFTConvol method)
(syncopy.specest.mtmfft.MultiTaperFFT method)
(syncopy.specest.wavelet.WaveletTransform method)
